PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000154.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 237aa    MW: 24838.9 Da    PI: 8.8789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000154.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066137159123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k+F++   L  H r+H
  Itr_sc000154.1_g00013.1 137 HECSICHKCFPTGQALGGHKRRH 159
                              78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-1284108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.70284106IPR007087Zinc finger, C2H2
SMARTSM003550.03384106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.62E-984159No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139122.0E-11136161IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12137159IPR007087Zinc finger, C2H2
SMARTSM003550.25137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MATLEALNSP TAASAPALQY LDQSWVKGKR TKRPRGVAEY QPTEEEYLAL CLIMLARGGA  60
GGGARAEEGL PTAAPPVSEQ KLLYKCSVCD KAFGSFQALG GHKASHRKLA GAAAGGGDDR  120
STTSTTTGNS SAGGRVHECS ICHKCFPTGQ ALGGHKRRHY EGGNVRIAAA RSNSVGVASS  180
DCVGSTNSSH RDFDLNLPAL PEFSPVFGGR FAEDEVESPH PAKKARLSIP TTKLQLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621070.17e-85PREDICTED: zinc finger protein ZAT10-like
RefseqXP_016490511.17e-85PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962898e-63ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ6JX073e-83Q6JX07_NICBE; Zinc finger protein PIF1
STRINGGLYMA06G04840.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-54salt tolerance zinc finger